Temperature niche conservatism and strong genetic structure are involved in the trans-Panamanian colonization of Matudaea (Hamamelidaceae) to Andean forests

Matudaea is the only genus of the Hamamelidaceae found in South America. The genus is composed by two extant species, M. trinervia, from Mexico and Costa Rica, and Matudaea colombiana, from the Colombian Andes; additional fossil records are present in Central Europe. Population genetics, molecular phylogenetics and niche modelling approaches were applied to explain processes related with the trans-Panamanian M. trinervia/M. colombiana split and the putative colonization of the latter to the northern Andes. The split between the two Matudaea species was estimated during Middle Miocene. The colonization of Matudaea into South America could have been facilitated by the closure of the Isthmus of Panama and the global decreasing of temperature during Miocene. Five haplotypes of M. colombiana were identified, which show an eastwards decline of genetic diversity and suggest a founder effect in the colonization of Eastern cordillera of the Colombian Andes. We detected a niche conservatism signal between the two Matudaea species related with Temperature of Coldest Month and Mean Temperature of Driest Quarter bioclimatic variables; this signal might be related to the narrow altitudinal range occupied by the two species.     

Plant and soil intake by organic broilers reared in tree- or grass-covered plots as determined by means of n-alkanes and of acid-insoluble ash

Free-range birds such as organic broilers may ingest soil and plants during exploration. The estimation of such intakes is of great interest to quantify possible nutritional supplies and also to evaluate the risk of exposure to parasites or to environmental contaminants. Marker-based techniques are now available and would allow to quantify plant and, especially, soil intake in free-range birds, and this quantification was the aim of this study. Methodologically, the proportion of plants in diet intake was determined first using a method based on n-alkanes. Subsequently, the fraction of soil in the total intake was estimated with a second marker, acid-insoluble ash. This approach was carried out to estimate ingested amounts of plants and soil for five successive flocks of organic broilers, exploring grass-covered yards or those under trees, at two time points for each yard: 51 and 64 days of age. Each factor combination (yard type×period=flock number×age) was repeated on two different yards of 750 broilers each.The birds’ plant intake varied widely, especially on grass-covered yards. The proportion of plant intake was significantly higher on grass-covered plots than under trees and was also affected, but to a lesser extent, by age or flock number. The ingestion of plants would generally not exceed 11 g of DM daily, except two extreme outliers of nearly 30 g. The daily plant intake under trees tended to be lower and never exceeded 7 g of DM. The amount of ingested plants increased significantly for spring flocks. It increased slightly but significantly with age. The proportion of ingested soil was significantly higher under trees than on grass-covered yards. Dry soil intake was generally low with not more than 3 g per day. Only in adverse conditions – that is, older birds exploring yards under trees in winter – soil intake reached the extreme value of nearly 5 g. Broilers on yards under trees ingested significantly more soil than on grass-covered yards with least square means of, respectively, 2.1 and 1.1 g dry soil per day. These quantifications would allow us to evaluate the impact of plant and soil intake in the management of free-range broilers, especially for the management in organic farming systems. Nevertheless, under the two rearing conditions tested in the current study, the quite low proportions of soil intakes would represent a low risk for the safety of the produced food, unless the birds explore yards on heavily contaminated soil.     

ELIMÄKI Locus Is Required for Vertical Proprioceptive Response in Birch Trees

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Effect of temperature on woodwasp (Sirex noctilio F.) development and parasitism by the entomopathogenic nematode,Deladenus siricidicola

The woodwasp, Sirex noctilio, is a significant global pest of exotic pine plantations in the Southern Hemisphere and now threatens native pine forests in North America. Management in Australia relies on biocontrol using the nematode, Deladenus (= Beddingia) siricidicola (Bedding), which infects and sterilises females who then further disperse the nematode. This pest is spreading into warmer regions in Australia and South America and coupled with the threat of global climate change, there is uncertainty as to how increasing temperatures will affect the biocontrol program. S. noctilio within nematode-inoculated wood were reared at four temperatures (24, 25.3, 26.6 and 28 °C) to investigate the effects of elevated temperatures on wasp development (emergence time, sex ratio and size), development of eggs (number, size, and maturation) and infection by the nematode. At 24 °C, which reflects current field temperature, S. noctilio were bigger in size and all the eggs were normal and all were infected with nematodes. Modest rises in temperature reflecting climate change scenarios resulted in smaller sized S. noctilio, disrupted egg development and maturation, and lowered the nematode sterilisation rate in females. Reduced S. noctilio female body size and egg infection will likely compromise biocontrol by D. siricidicola in its current distribution, but disrupted egg development may act directly on the pest, limiting dispersal of S. noctilio into subtropical pine plantations and adaptation to climate change.     

Pulsed-field gel electrophoresis for genotypic comparison of Rhizobium bacteria that nodulate leguminous trees

Abstract Pulsed-field gel electrophoresis (PFGE) was applied to characterize Rhizobium bacteria isolated from the root nodules of Acacia senegal and Prosopis chilensis trees growing in Sudan and Keya. For the electrophoresis, the total DNA of 42 isolates, embedded in agarose, was digested by a rare-cutting restriction endonuclease, Xba I. The PFGE run resulted in good resolution of the DNA fragments and gave the strains distinctive fingerprint patterns. The patterns were analysed visually and using automated clustering analysis, which divided the strains into groups resembling the results generated by numerical taxonomy. However, several strains had unique banding patterns, which indicates that these strains are genetically very diverse.     

Priors for the Bayesian star paradox

We show that the Bayesian star paradox, first proved mathematically by Steel and Matsen for a specific class of prior distributions, occurs in a wider context including less regular, possibly discontinuous, prior distributions.